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Allanlane5's suggestion for an op amp is a good one, but I'm thinking a comparator like the LM311 might be the best way to go. We use this in a design at work to track the output of a thermistor. The idea is to feed the signal to an input, which allows you to 'snoop' the tranny output without breaking the circuit. This is a 8 pin device, DIP or SOIC, which can be had at DigiKey for 50 cents in single quantities. Which is a pain when you realize you'll pay a $5 handling fee and lots more for shipping, but... you DO want this to work, right?
This part will work with voltages (inputs, outputs and rails) up to 30 Volts. You can think of this as a voltage translator. It has an open-collector output, so can be used to switch dissimilar voltages between the input and output. Depending on how you set up the inputs (inverting or non-inverting) you can have a high out when the input is low, vice versa, or follow the input. In your case, connect the LM311's Vcc to the car's supply and the pullup resistor on its output to the 5V driving the Atom. When the higher voltage of the tranny pulse goes from ground to 12-13V, the comparator moves between ground and 5V. You can use a voltage divider on one input of the comparator to determine when it "fires", or switches state. Using a potentiometer, you can dial this down until it fires reliably without dipping down into the noise (it's a car - OF COURSE there's electrical noise!) and jerking around the count.
As for pin assignments, go to DigiKey and use their excellent site to find and download the data sheets for this. There are TONS of sites discussing comparator usage.
And have fun doing it! kenjj
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